Lifecycle and Ecology References
Platynereis acquaculture Kuehn et al. 2019, Fischer (ed.) 2013
Ecology and Distribution Veedin Rajan et al. 2021, Wäge et al. 2017, Popa et al. 2013, Giangrande et al. 2002
Toxicology Jha et al. 1997, García-Alonso et al. 2011, André et al. 2017
Ageing Golding and Yuwono 1994, Schenk et al. 2016, Schenk and Bannister et al. 2019
Behavior References
Chronobiology Zantke et al. 2013, Arboleda et al. 2019, Poehn and Krishnan et al. 2021, Zurl et al. 2021, Veedin Rajan et al. 2021
Predation assay Bezares-Calderón et al. 2018
Feeding assay Williams et al. 2015, Andreatta et al. 2020, Gambi et al. 2000, Kuehn et al. 2019]
Microfluidics Chartier et al. 2018, Ramanathan and Simakov et al. 2015
Chemical cues Torres et al. 2021, Wäge et al. 2018, Chartier et al. 2018
Pharmacology (larval/embryonic development) Demilly et al. 2013, Gazave et al. 2017, Handberg-Thorsager and Gutierrez-Mazariegos et al. 2018, Handberg-Thorsager et al. 2019, Tomer et al. 2010, Lauri and Brunet et al. 2014, Denes and Jékely et al. 2007, Tosches et al. 2014, Schneider and Bowerman 2007 Žídek et al. 2018, Bakalenko et al. 2017
Pharmacology (neuronal signalling) Conzelmann et al. 2011, Randel et al. 2014, Verasztó et al. 2017
Pharmacology (regeneration) Planques et al. 2019, Planques et al. 2020
Pharmacology (rhythm and clock analyses) Zantke et al. 2013, Zurl et al. 2021, Poehn and Krishnan et al. 2021
Cell ablation by genetic targeting Veedin-Rajan et al. 2013, Ayers et al. 2018
Cell ablation by laser nanosurgery Verasztó et al. 2017, Randel et al. 2014, Jékely et al. 2008
Electrophysiology Conzelmann et al. 2011, Tosches et al. 2014
Imaging References
Live imaging Lauri and Brunet et al. 2014, Vopalensky et al. 2019, Özpolat et al. 2017, Verasztó et al. 2017
Posterior regeneration stages, timeline and characterization Planques et al. 2019, Kostyuchenko et al. 2018
Photoconversion during life imaging Verasztó et al. 2017
Life cell-cycle biosensors Özpolat et al. 2017
Cell proliferation / cell death assays Gazave and Béhague et al. 2013, Demilly et al. 2013, Gazave et al. 2017, Planques et al. 2019
Calcium imaging Tosches et al. 2014, Gühmann et al. 2015, Verasztó et al. 2017, Williams et al. 2017, Verasztó and Gühmann et al. 2018, Chartier et al. 2018, Bezares-Calderón et al. 2018
Clearing methods Pende et al. 2020, Asadulina et al. 2012
Histology Pfeifer et al. 2014, Song et al. 2020
Immunohistochemistry Conzelmann et al. 2011, Schneider and Bowerman 2007, Conzelmann and Jékely 2012, Poehn and Krishnan et al. 2021
Immunogold labeling for ultra-thin sections Shahidi et al. 2015
Hybridization Chain Reaction probe generator https://github.com/rwnull/insitu_probe_generator, Kuehn et al. 2021, Revilla-i-Domingo at al, 2021
In situ hybridization, single molecule FISH Tessmar-Raible and Steinmetz et al. 2018, Basin et al. 2015
Chromosomal Fluorescent In Situ Hybridisation Hui et al. 2012, Hui et al. 2007
Reflection-confocal microscopy of NBT/BCIP stained embryos Jékely and Arendt 2018, Gazave et al. 2017
Embryonic and larval whole-body gene expression pattern registration Gazave et al. 2017, Kostyuchenko et al. 2018, Asadulina et al. 2012, Asadulina et al. 2015, Vergara et al. 2017, Tomer et al. 2010
SEM (SEM, SBSEM) Williams et al. 2015, Vergara et al. 2020
TEM (ssTEM, Immuno EM) Shahidi et al. 2015, Randel et al. 2014, Randel and Shahidi et al. 2015, Randel et al. 2013
Connectomics Randel et al. 2014, Williams et al. 2017, Verasztó and Gühmann et al. 2018, Bezares-Calderón et al. 2018, Verasztó et al. 2020
whole-body connectome and cell type complement https://catmaid.jekelylab.ex.ac.uk, Verasztó et al. 2020
Sequencing and DNA/ RNA editing References
PdumBase PdumBase
Jékely lab transcriptomes https://jekelylab.ex.ac.uk/blast/
Global and gene-specific DNA methylation quantifications Planques et al. 2020
Transcriptomics Schenk and Bannnister et al. 2019, Conzelmann et al. 2013, Wäge et al. 2016
Stage-specific transcriptomes Chou et al. 2016, Chou et al. 2018
Single cell RNA sequencing/ single nuclei RNA sequencing Achim et al. 2018, Achim and Pettit et al. 2015
Embryo microinjections Özpolat et al. 2017, Lauri and Brunet et al. 2014, Bannister et al. 2014, Backfisch et al. 2013, Conzelmann et al. 2013
CRISPR Bezares-Calderón et al. 2018
TALENS Bannister et al. 2014, Veedin Rajan et al. 2021, Verasztó and Gühmann et al. 2018, Andreatta et al. 2020, Poehn and Krishnan et al. 2021, Zurl et al. 2021
Site-directed RNA editing Hanswillemenke et al. 2015
Stable transgenesis Backfisch et al. 2013, Backfisch and Kozin et al. 2014
Promoter reporter constructs Verasztó et al. 2017, Backfisch et al. 2013, Backfisch and Kozin et al. 2014, Veedin-Rajan et al. 2013
Gene knock-down (morpholinos, shRNA) Handberg-Thorsager and Gutierrez-Mazariegos et al. 2018, Conzelmann et al. 2013, Shahidi et al. 2015, Williams et al. 2015
Biochemistry References
Western blotting Stephan and Bowerman 2007, Rebscher and Zelada-Gonzáles et al. 2007, Poehn and Krishnan et al. 2021, Zurl et al. 2021
Northern analysis Pfeifer et al. 2014, Rebscher and Zelada-Gonzáles et al. 2007
GPCR deorphanisation Conzelmann et al. 2013, Bauknecht and Jékely 2015, Bauknecht and Jékely 2017, Williams et al. 2017, Andreatta et al. 2020
Peptide-gated ion channels Schmidt et al. 2018
Neuropeptidomics and peptidomics Conzelmann et al. 2013, Schenk and Bannnister et al. 2019, Veedin Rajan et al. 2021
Opsin/ Cryptochrome spectra Gühmann et al. 2015, Verasztó and Gühmann et al. 2018, Veedin Rajan et al. 2021, Ayers et al. 2018, Tsukamoto et al. 2017, Revilla-i-Domingo et al. 2021, Zurl et al. 2021, Poehn and Krishan et al. 2021
qRT-PRC Song et al. 2020, Arboleda et al. 2019, Pfeifer et al. 2014, Zantke et al. 2013, Andreatta et al. 2020, Poehn and Krishnan et al. 2021
Proteomics Schenk and Banister et al. 2019, Veedin Rajan et al. 2021